Web tools
- ViroBLAST
A BLAST web server that allows users to search multiple sequence databases including public and local databases.
- DIVER
A web interface to analyze sequence divergence and diversity.
- InSites
A web interface to detect informative sites in a set of aligned nucleotide or amino acid sequences.
- EpitopeDB
A web database to store, retrieve and analyze HIV immunology data (ELISpot, HLA, etc.).
- PrimerDB
A web database to store, search and retrieve lab used HIV primers.
- LiteraTracker
A web service to track literatures.
- COTree
A web interface that re-roots a newick tree at the least squares point (COT).
- rdvg
A test for the detection of latent reservoirs.
- idvg
A test for the detection of continued viral replication under antiviral therapies.
- DistParser
A tool to pull branch lengths from newick tree and returns divergence and diversity.
- JitterCalc
An Excel spreadsheet that jitters points with identical (x, y) values.
- PAUP* Diversity Matrix Formatter A tool to reformat diagonal distance matrices into columnar output
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