Format Conversion |
|
|---|---|
| Combine FASTA | Combines multiple FASTA entries into a single sequence. |
| EMBL to FASTA | Returns the entire sequence contained in an EMBL file in FASTA format. |
| EMBL Feature Extractor | Parses the feature table of an EMBL file and returns the feature sequences. |
| EMBL Trans Extractor | Parses the feature table of an EMBL file and returns the protein translations. |
| Filter DNA | Removes non-DNA characters from text. |
| Filter Protein | Removes non-protein characters from text. |
| GenBank to FASTA | Returns the entire sequence contained in a GenBank file in FASTA format. |
| GenBank Feature Extractor | Parses the feature table of a GenBank file and returns the feature sequences. |
| GenBank Trans Extractor | Parses the feature table of a GenBank file and returns the protein translations. |
| One to Three | Converts single letter amino acid codes to three letter codes. |
| Range Extractor DNA | Reads a list of positions and ranges and returns those parts of a DNA sequence. |
| Range Extractor Protein | Reads a list of positions and ranges and returns those parts of a protein sequence. |
| Reverse Complement | Determines the reverse-complement, reverse, or complement of the sequence you enter. |
| Three to One | Converts three letter amino acid codes to one letter codes. |
Sequence Analysis |
|
| Codon Plot | Plots codon frequency (according to the codon table you enter) for each codon in a DNA sequence. |
| Codon Usage | Returns a standard codon usage table. |
| CpG Islands | Returns a list of potential CpG islands. |
| DNA Pattern Find | Returns positions of the patterns you enter. |
| DNA Stats | Returns basic sequence statistics. |
| Fuzzy Search DNA | Returns sequences that are identical or similar to a query sequence. |
| Fuzzy Search Protein | Returns sequences that are identical or similar to a query sequence. |
| Ident and Sim | Accepts aligned sequences in FASTA format and calculates the identity and similarity of each sequence pair. |
| Multi Rev Trans | Can be used to predict a DNA sequence in another species using a protein sequence alignment. |
| Mutate for Digest | Finds DNA sequences that can easily be converted to a restriction site. |
| ORF Finder | Determines the positions of open reading frames. |
| Pairwise Align Codons | Returns the optimal global alignment for two coding DNA sequences. |
| Pairwise Align DNA | Returns the optimal global alignment for two DNA sequences. |
| Pairwise Align Protein | Returns the optimal global alignment for two protein sequences. |
| PCR Primer Stats | Returns a report describing PCR primer properties. |
| PCR Products | Generates PCR products from a template and two primer sequences. |
| Protein GRAVY | Returns the grand average of hydropathy value of protein sequences. |
| Protein Isoelectric Point | Returns the predicted isoelectric point of protein sequences. |
| Protein Molecular Weight | Calculates the molecular weight of the protein you enter. |
| Protein Pattern Find | Returns positions of the patterns you enter. |
| Protein Stats | Returns basic sequence statistics. |
| Restriction Digest | Converts the sequence you enter into restriction fragments. |
| Restriction Summary | Returns the number and positions of restriction sites. |
| Reverse Translate | Can be used to convert protein into DNA. |
| Translate | Returns the translation in the reading frame you specify. |
Sequence Figures |
|
| Color Align Conservation | Colors a sequence alignment based on sequence conservation. |
| Color Align Properties | Colors a protein alignment based on biochemical properties of residues. |
| Group DNA | Numbers and groups DNA according to your specifications. |
| Group Protein | Numbers and groups amino acids according to your specifications. |
| Primer Map | Shows PCR primer annealing sites, translations, and restriction sites. |
| Restriction Map | Shows restriction sites and protein translations. |
| Translation Map | Shows protein translations. |
Random Sequences |
|
| Mutate DNA | Introduces random mutations into DNA sequences. |
| Mutate Protein | Introduces random mutations into protein sequences. |
| Random Coding DNA | Generates a random coding sequence of the length you specify. |
| Random DNA Sequence | Generates a random DNA sequence of the length you specify. |
| Random Protein Sequence | Generates a random protein sequence of the length you specify. |
| Sample DNA | Samples bases from a DNA sequence with replacement. |
| Sample Protein | Samples residues from a protein sequence with replacement. |
| Shuffle DNA | Randomly shuffles the DNA sequence you enter. |
| Shuffle Protein | Randomly shuffles the protein sequence you enter. |
Miscellaneous |
|
| IUPAC codes | IUPAC codes for DNA and protein. |
| Genetic codes | The genetic codes used in the Sequence Manipulation Suite. |
| Browser compatibility | Browser compatibility. |
| Mirror this site | Mirror the Sequence Manipulation Suite. |
| Use this site off-line | Use the Sequence Manipulation Suite off-line. |
| About this site | About the Sequence Manipulation Suite. |
| Acknowledgments | Acknowledgments. |
| Reference | Citing the Sequence Manipulation Suite. |
Copyright © 2007 |  |