ICC is a software pipeline to analyze next-generation sequencing data (454 pyrosequencing, Ion Torrent, etc.), including read quality filtering and alignment, indel and carryforward error correction, single nucleotide variant calling, and calculation of nucleotide variant and hyplotype frequencies. ICC was written in Perl scripting language and has been tested on Linux, Mac OS X and MS Windows systems. The most recent version is ICC_v2.0.

ICC source code and example data: