This program is designed to parse the output of LANL's HIV/SIV Sequence Locator Tool, and output AA or NA positions and genome NA positions for either nuclotide sequences or amino acid sequences.
How to run
chmod +x SequLocatorParser.pl
Create a subdirectory in your working directory to hold input files and output files. In the subdirectory, type following command:
perl ../SequLocatorParser.pl InputFile OutputFile