DIVEIN is a web service that performs automated maximum likelihood phylogenetic analyses of nucleotide and amino acid sequences.
Starting with a set of aligned sequences, DIVEIN can:
- calculate phylogenetic trees via a variety of evolutionary models by three programs of PhyML, FastTree and RAxML.
- reconstruct the consensus, Most Recent Common Ancestor (MRCA) and Center of Tree (COT) sequences.
- re-root trees at COT.
- compute genetic distance distributions, diversity, and divergence from the consensus, MRCA, COT and any sequence in the alignment.
- compute hamming distance distributions and diversity.
- graphically represent the inferred tree and plots of divergence, diversity, and distance distribution histograms.
- detect, visualize and numerically summarize phylogenetically informative sites as well as private mutations.
- compare intra-individual genetic sequence diversity between populations.
- define clusters by a genetic similarity cluster identification tool that includes two approaches (TN93 pairwise genetic distance and
Phylogenetic branch lengths)
