About Sequence Name Reformatter

Sequence Name Reformatter developed in Dr. Mullins Lab at University of Washington is a web interface for users to extract information they want in sequence name and output a sequence fasta file with newly formatted sequence names only containing the extracted information.

Input

A sequence fasta file.

Example: >gi|672892375|gb|AIK03017.1| nef protein [Human immunodeficiency virus 1] MGGKWSKSSLVGWPTVRERMKRTEPAADGVGAVSRDLEKHGAVTSSNTAATNADCAWLEAQEDEEVGFPV RPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQRRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFG WCFKLVPVEPQKVEEANEGENNRLLHPMSLHGMDDPEREVLEWRFDSRLAFHHMARELHPEYYKDC >gi|672892373|gb|AIK03016.1| nef protein [Human immunodeficiency virus 1] MGGKWSKRVGWSTVRERMRRAEPAAVGVGAVSQDLEKHGAITSSNTAANNADCAWLEAQEKEEVGFPVRP QVPLRPMTYKAAIDLSHFLKEEGGLEGLIHSQQRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWC FKLVPVEPEKVEEANEGENNSLLHPMSQHGMEDPEKEVLEWRFDSRLAFHHMARELHPEYYKNC >gi|672892371|gb|AIK03015.1| nef protein [Human immunodeficiency virus 1] MGGKWSKXSXVGWPAVRZRXXRAEPAAXGVGAVSRXLENRGAXTSSNTXANNAACAWLEAQEEEEVGFPV RPQVPLRPMTYKAXXDJSHXLXXXGGLXGJVWSQRRQDILDLWXYHTQGYFPDWQNYTPGPGTRFPLTFG WCFKLVPLDPEQVEKANEGENNSLLHPMSQHGTDDPEKEVLIWKFDSRLAFHHMARELHPEYYKDC >gi|672892369|gb|AIK03014.1| nef protein [Human immunodeficiency virus 1] MGGKWSKRTSGWSTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTATNNADCAWLEAQEEEEVGFPVR PQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQRRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGW CFKLVPVEPEKIEEANEGENNSLLHPMSLHGIEDPEREVLVWKFDSRLAFHHMARELHPEYYKNC >gi|672892367|gb|AIK03013.1| nef protein [Human immunodeficiency virus 1] MGGKWSKRSGAGWPTVRERMKRAEPAAEGVGAVSRDLEKHGAITSSNTPTNNAACAWLEAQEEEEVGFPV RPQVPLRPMTYKGAVDLSHFLKEKGGLEGLVHSQKRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFG WCFKLVPAEPEQVEEANEGENNSLLHPMSLHGMEDPEREVLVWKFDSRLAFHHMARELHPEYYKDC

Delimiter(s) that separate information in sequence name. If there are more than one delimiter, please put all delimiter together in the text box. e.g. "-/,".

Example 1: If choosing "|" as delimiter for the example input file, all information in sequence name separated by the delimiter are listed in the left box. If the fourth item "AIK03017.1" in the left box was picked and moved to the right box, by submitting you will get sequence fasta file with new sequence names (output example 1).

Example 2: If choosing "| " as delimiter for the example input file, all information in sequence name separated by the delimiter are listed in the left box. If the fourth and fifth items ("AIK03017.1" ang "nef") in the left box were picked and moved to the right box, by submitting you will get sequence fasta file with new sequence names (output example 2).

From the interface above user can select information separated by delimiter(s) from the first sequence name in the left box and move them into the right box.: Example 1: If choosing "|" as delimiter for the example input file, all information in sequence name separated by the delimiter are listed in the left box. If the fourth item "AIK03017.1" in the left box was picked and moved to the right box, by submitting you will get sequence fasta file with new sequence names (output example 1).; Example 2: If choosing "| " as delimiter for the example input file, all information in sequence name separated by the delimiter are listed in the left box. If the fourth and fifth items ("AIK03017.1" ang "nef") in the left box were picked and moved to the right box, by submitting you will get sequence fasta file with new sequence names (output example 2).

From the interface above user can select information separated by delimiter(s) from the first sequence name in the left box and move them into the right box.
Output

A sequence fasta file with new sequence names only containing the extracted information.

Example 1: >AIK03017.1 MGGKWSKSSLVGWPTVRERMKRTEPAADGVGAVSRDLEKHGAVTSSNTAATNADCAWLEAQEDEEVGFPV RPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQRRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFG WCFKLVPVEPQKVEEANEGENNRLLHPMSLHGMDDPEREVLEWRFDSRLAFHHMARELHPEYYKDC >AIK03016.1 MGGKWSKRVGWSTVRERMRRAEPAAVGVGAVSQDLEKHGAITSSNTAANNADCAWLEAQEKEEVGFPVRP QVPLRPMTYKAAIDLSHFLKEEGGLEGLIHSQQRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWC FKLVPVEPEKVEEANEGENNSLLHPMSQHGMEDPEKEVLEWRFDSRLAFHHMARELHPEYYKNC >AIK03015.1 MGGKWSKXSXVGWPAVRZRXXRAEPAAXGVGAVSRXLENRGAXTSSNTXANNAACAWLEAQEEEEVGFPV RPQVPLRPMTYKAXXDJSHXLXXXGGLXGJVWSQRRQDILDLWXYHTQGYFPDWQNYTPGPGTRFPLTFG WCFKLVPLDPEQVEKANEGENNSLLHPMSQHGTDDPEKEVLIWKFDSRLAFHHMARELHPEYYKDC >AIK03014.1 MGGKWSKRTSGWSTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTATNNADCAWLEAQEEEEVGFPVR PQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQRRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGW CFKLVPVEPEKIEEANEGENNSLLHPMSLHGIEDPEREVLVWKFDSRLAFHHMARELHPEYYKNC >AIK03013.1 MGGKWSKRSGAGWPTVRERMKRAEPAAEGVGAVSRDLEKHGAITSSNTPTNNAACAWLEAQEEEEVGFPV RPQVPLRPMTYKGAVDLSHFLKEKGGLEGLVHSQKRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFG WCFKLVPAEPEQVEEANEGENNSLLHPMSLHGMEDPEREVLVWKFDSRLAFHHMARELHPEYYKDC Example 2: >AIK03017.1 nef MGGKWSKSSLVGWPTVRERMKRTEPAADGVGAVSRDLEKHGAVTSSNTAATNADCAWLEAQEDEEVGFPV RPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQRRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFG WCFKLVPVEPQKVEEANEGENNRLLHPMSLHGMDDPEREVLEWRFDSRLAFHHMARELHPEYYKDC >AIK03016.1 nef MGGKWSKRVGWSTVRERMRRAEPAAVGVGAVSQDLEKHGAITSSNTAANNADCAWLEAQEKEEVGFPVRP QVPLRPMTYKAAIDLSHFLKEEGGLEGLIHSQQRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWC FKLVPVEPEKVEEANEGENNSLLHPMSQHGMEDPEKEVLEWRFDSRLAFHHMARELHPEYYKNC >AIK03015.1 nef MGGKWSKXSXVGWPAVRZRXXRAEPAAXGVGAVSRXLENRGAXTSSNTXANNAACAWLEAQEEEEVGFPV RPQVPLRPMTYKAXXDJSHXLXXXGGLXGJVWSQRRQDILDLWXYHTQGYFPDWQNYTPGPGTRFPLTFG WCFKLVPLDPEQVEKANEGENNSLLHPMSQHGTDDPEKEVLIWKFDSRLAFHHMARELHPEYYKDC >AIK03014.1 nef MGGKWSKRTSGWSTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTATNNADCAWLEAQEEEEVGFPVR PQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQRRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGW CFKLVPVEPEKIEEANEGENNSLLHPMSLHGIEDPEREVLVWKFDSRLAFHHMARELHPEYYKNC >AIK03013.1 nef MGGKWSKRSGAGWPTVRERMKRAEPAAEGVGAVSRDLEKHGAITSSNTPTNNAACAWLEAQEEEEVGFPV RPQVPLRPMTYKGAVDLSHFLKEKGGLEGLVHSQKRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFG WCFKLVPAEPEQVEEANEGENNSLLHPMSLHGMEDPEREVLVWKFDSRLAFHHMARELHPEYYKDC