Instructions for NetOGlycParser.pl

This program is designed to parse the output of NetOGlyc 3.1 Server that produces neural network perdictions of mucin type GalNAc O-glycosylation sites in mammalian proteins.

Input

  1. NetOGlyc output saved as a text file.

Output

  1. Tab delimited table lists sequence name, sequence length, total possible and over-threshold predicted O-glycosylation sites.

How to run

  1. Download NetOGlycParser.pl to your local computer, and set it as executable by typing the following command in your working directory:

    chmod +x NetOGlycParser.pl

  2. Create a subdirectory in your working directory to hold input and output files.

  3. In the subdirectory, type following command:

    perl ../NetOGlycParser.pl NetOGlycOutputFile ParseOutputFile