This program is designed to parse the output of NetOGlyc 3.1 Server that produces neural network perdictions of mucin type GalNAc O-glycosylation sites in mammalian proteins.
How to run
chmod +x NetOGlycParser.pl
Create a subdirectory in your working directory to hold input and output files.
In the subdirectory, type following command:
perl ../NetOGlycParser.pl NetOGlycOutputFile ParseOutputFile