This program is designed to check a set of sequences and remove the identical sequences and overlapped short sequences.
Removed overlapped sequences.
How to run
chmod +x RemoveOverlapSeq.pl
Create a subdirectory in your working directory to hold input files and output files. In the subdirectory, type following command:
perl ../RemoveOverlapSeq.pl SequenceNexusFile OutputNexusFile OutputRemovedSeqFile