Divergence, Diversity,
Informative Sites and
Phylogenetic Analyses


Data Input
Upload sequence alignment file Nexus Phylip Fasta Example
Sequence data type
Substitution Model
Substitution model
Equilibrium frequencies
Transition/transversion ratio   Fixed Estimated
Proportion of invariable sites   Fixed Estimated
Number of substitution rate categories
Gamma distribution parameter   Fixed Estimated
Tree Searching
Type of tree improvement
Optimise tree
Branch Support
Compute aLRT   Yes No
Perform bootstrap   Yes No
Divergence/Diversity measurements   *New feature: Defining groups and selecting sequences for calculating divergence are now on the next page, after you click "Submit & Email Results".
Calculate divergence/diversity based on
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