Divergence, Diversity,
Informative Sites and
Phylogenetic Analyses

Phylogeny/Divergence/Diversity by FastTree 2.1.10

Data Input
Upload sequence alignment file Phylip Fasta Example
Sequence data type
Substitution Model
Substitution model
Number of substitution rate categories   Constant Variable
Discrete gamma distribution   Yes No
Branch Support
Shimodaira-Hasegawa test  resamples   Yes No
Divergence/Diversity measurements   *Defining groups and selecting sequences for calculating divergence are on the next page, after you click "Submit & Email Results".
Calculate tree based divergence/diversity   Yes No
Your Information
Your email

When using FastTree please cite the following paper: Price, M.N., Dehal, P.S., and Arkin, A.P. (2010) FastTree 2 - Approximately Maximum-Likelihood Trees for Large Alignments. PLoS ONE, 5(3):e9490.